Error: netcdf.inc

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Error: netcdf.inc

Postby atyam » Tue Aug 30, 2016 4:32 pm

Hi

I am trying to configure the WRF and while doing it, i am stuck with this error.
Error : Not found /home/fahad/Documents/WRF/WRFV3/netcdf_links/include/netcdf.inc
Please check this installation of NetCDF and re-run this configure script[/b][/i]
Could you please help me. Please find the below
>
> fahad@fahad-Satellite-L745:~/Documents/WRF/WRFV3$ ./configure
> checking for perl5... no
> checking for perl... found /usr/bin/perl (perl)
> ** There is an existing ./netcdf_links file. Should I use? [y]
> y
> Will use NETCDF in dir: /home/fahad/Documents/WRF/WRFV3/netcdf_links
> HDF5 not set in environment. Will configure WRF for use without.
> PHDF5 not set in environment. Will configure WRF for use without.
> Will use 'time' to report timing information
> $JASPERLIB or $JASPERINC not found in environment, configuring to build without grib2 I/O...
> ------------------------------------------------------------------------
> Please select from among the following Linux x86_64 options:
>
> 1. (serial) 2. (smpar) 3. (dmpar) 4. (dm+sm) PGI (pgf90/gcc)
> 5. (serial) 6. (smpar) 7. (dmpar) 8. (dm+sm) PGI (pgf90/pgcc): SGI MPT
> 9. (serial) 10. (smpar) 11. (dmpar) 12. (dm+sm) PGI (pgf90/gcc): PGI accelerator
> 13. (serial) 14. (smpar) 15. (dmpar) 16. (dm+sm) INTEL (ifort/icc)
> 17. (dm+sm) INTEL (ifort/icc): Xeon Phi (MIC architecture)
> 18. (serial) 19. (smpar) 20. (dmpar) 21. (dm+sm) INTEL (ifort/icc): Xeon (SNB with AVX mods)
> 22. (serial) 23. (smpar) 24. (dmpar) 25. (dm+sm) INTEL (ifort/icc): SGI MPT
> 26. (serial) 27. (smpar) 28. (dmpar) 29. (dm+sm) INTEL (ifort/icc): IBM POE
> 30. (serial) 31. (dmpar) PATHSCALE (pathf90/pathcc)
> 32. (serial) 33. (smpar) 34. (dmpar) 35. (dm+sm) GNU (gfortran/gcc)
> 36. (serial) 37. (smpar) 38. (dmpar) 39. (dm+sm) IBM (xlf90_r/cc_r)
> 40. (serial) 41. (smpar) 42. (dmpar) 43. (dm+sm) PGI (ftn/gcc): Cray XC CLE
> 44. (serial) 45. (smpar) 46. (dmpar) 47. (dm+sm) CRAY CCE (ftn/cc): Cray XE and XC
> 48. (serial) 49. (smpar) 50. (dmpar) 51. (dm+sm) INTEL (ftn/icc): Cray XC
> 52. (serial) 53. (smpar) 54. (dmpar) 55. (dm+sm) PGI (pgf90/pgcc)
> 56. (serial) 57. (smpar) 58. (dmpar) 59. (dm+sm) PGI (pgf90/gcc): -f90=pgf90
> 60. (serial) 61. (smpar) 62. (dmpar) 63. (dm+sm) PGI (pgf90/pgcc): -f90=pgf90
> 64. (serial) 65. (smpar) 66. (dmpar) 67. (dm+sm) INTEL (ifort/icc): HSW/BDW
> 68. (serial) 69. (smpar) 70. (dmpar) 71. (dm+sm) INTEL (ifort/icc): KNL MIC
>
> Enter selection [1-71] : 34
> ------------------------------------------------------------------------
> Compile for nesting? (1=basic, 2=preset moves, 3=vortex following) [default 1]: 1
>
> Configuration successful!
> ------------------------------------------------------------------------
> testing for MPI_Comm_f2c and MPI_Comm_c2f
> MPI_Comm_f2c and MPI_Comm_c2f are not supported
> testing for fseeko and fseeko64
> fseeko64 is supported
> ------------------------------------------------------------------------
>
> # Settings for Linux x86_64 ppc64le, gfortran compiler with gcc (dmpar)
> #
> DESCRIPTION = GNU ($SFC/$SCC)
> DMPARALLEL = 1
> OMPCPP = # -D_OPENMP
> OMP = # -fopenmp
> OMPCC = # -fopenmp
> SFC = gfortran
> SCC = gcc
> CCOMP = gcc
> DM_FC = mpif90 -f90=$(SFC)
> DM_CC = mpicc -cc=$(SCC)
> FC = time $(DM_FC)
> CC = $(DM_CC) -DFSEEKO64_OK
> LD = $(FC)
> RWORDSIZE = $(NATIVE_RWORDSIZE)
> PROMOTION = #-fdefault-real-8
> ARCH_LOCAL = -DNONSTANDARD_SYSTEM_SUBR -DWRF_USE_CLM
> CFLAGS_LOCAL = -w -O3 -c
> LDFLAGS_LOCAL =
> CPLUSPLUSLIB =
> ESMF_LDFLAG = $(CPLUSPLUSLIB)
> FCOPTIM = -O2 -ftree-vectorize -funroll-loops
> FCREDUCEDOPT = $(FCOPTIM)
> FCNOOPT = -O0
> FCDEBUG = # -g $(FCNOOPT) # -ggdb -fbacktrace -fcheck=bounds,do,mem,pointer -ffpe-trap=invalid,zero,overflow
> FORMAT_FIXED = -ffixed-form
> FORMAT_FREE = -ffree-form -ffree-line-length-none
> FCSUFFIX =
> BYTESWAPIO = -fconvert=big-endian -frecord-marker=4
> FCBASEOPTS_NO_G = -w $(FORMAT_FREE) $(BYTESWAPIO)
> FCBASEOPTS = $(FCBASEOPTS_NO_G) $(FCDEBUG)
> MODULE_SRCH_FLAG =
> TRADFLAG = -traditional
> CPP = /lib/cpp -P
> AR = ar
> ARFLAGS = ru
> M4 = m4 -G
> RANLIB = ranlib
> RLFLAGS =
> CC_TOOLS = $(SCC)
>
> ###########################################################
> ######################
> # POSTAMBLE
>
> FGREP = fgrep -iq
>
> ARCHFLAGS = $(COREDEFS) -DIWORDSIZE=$(IWORDSIZE) -DDWORDSIZE=$(DWORDSIZE) -DRWORDSIZE=$(RWORDSIZE) -DLWORDSIZE=$(LWORDSIZE) \
> $(ARCH_LOCAL) \
> $(DA_ARCHFLAGS) \
> -DDM_PARALLEL \
> \
> -DNETCDF \
> \
> \
> \
> \
> \
> \
> \
> \
> \
> \
> -DUSE_ALLOCATABLES \
> -DGRIB1 \
> -DINTIO \
> -DKEEP_INT_AROUND \
> -DLIMIT_ARGS \
> -DCONFIG_BUF_LEN=$(CONFIG_BUF_LEN) \
> -DMAX_DOMAINS_F=$(MAX_DOMAINS) \
> -DMAX_HISTORY=$(MAX_HISTORY) \
> -DNMM_NEST=$(WRF_NMM_NEST)
> CFLAGS = $(CFLAGS_LOCAL) -DDM_PARALLEL \
> -DMAX_HISTORY=$(MAX_HISTORY) -DNMM_CORE=$(WRF_NMM_CORE)
> FCFLAGS = $(FCOPTIM) $(FCBASEOPTS)
> ESMF_LIB_FLAGS =
> # ESMF 5 -- these are defined in esmf.mk, included above
> ESMF_IO_LIB = -L$(WRF_SRC_ROOT_DIR)/external/esmf_time_f90 -lesmf_time
> ESMF_IO_LIB_EXT = -L$(WRF_SRC_ROOT_DIR)/external/esmf_time_f90 -lesmf_time
> INCLUDE_MODULES = $(MODULE_SRCH_FLAG) \
> $(ESMF_MOD_INC) $(ESMF_LIB_FLAGS) \
> -I$(WRF_SRC_ROOT_DIR)/main \
> -I$(WRF_SRC_ROOT_DIR)/external/io_netcdf \
> -I$(WRF_SRC_ROOT_DIR)/external/io_int \
> -I$(WRF_SRC_ROOT_DIR)/frame \
> -I$(WRF_SRC_ROOT_DIR)/share \
> -I$(WRF_SRC_ROOT_DIR)/phys \
> -I$(WRF_SRC_ROOT_DIR)/chem -I$(WRF_SRC_ROOT_DIR)/inc \
> -I$(NETCDFPATH)/include \
>
> REGISTRY = Registry
> CC_TOOLS_CFLAGS = -DNMM_CORE=$(WRF_NMM_CORE)
>
> LIB_BUNDLED = \
> $(WRF_SRC_ROOT_DIR)/external/fftpack/fftpack5/libfftpack.a \
> $(WRF_SRC_ROOT_DIR)/external/io_grib1/libio_grib1.a \
> $(WRF_SRC_ROOT_DIR)/external/io_grib_share/libio_grib_share.a \
> $(WRF_SRC_ROOT_DIR)/external/io_int/libwrfio_int.a \
> $(ESMF_IO_LIB) \
> $(WRF_SRC_ROOT_DIR)/external/RSL_LITE/librsl_lite.a \
> $(WRF_SRC_ROOT_DIR)/frame/module_internal_header_util.o \
> $(WRF_SRC_ROOT_DIR)/frame/pack_utils.o
>
> LIB_EXTERNAL = \
> -L$(WRF_SRC_ROOT_DIR)/external/io_netcdf -lwrfio_nf -L/home/fahad/Documents/WRF/WRFV3/netcdf_links/lib
>
> LIB = $(LIB_BUNDLED) $(LIB_EXTERNAL) $(LIB_LOCAL) $(LIB_WRF_HYDRO)
> LDFLAGS = $(OMP) $(FCFLAGS) $(LDFLAGS_LOCAL)
> ENVCOMPDEFS =
> WRF_CHEM = 0
> CPPFLAGS = $(ARCHFLAGS) $(ENVCOMPDEFS) -I$(LIBINCLUDE) $(TRADFLAG)
> NETCDFPATH = /home/fahad/Documents/WRF/WRFV3/netcdf_links
> HDF5PATH =
> WRFPLUSPATH =
> PNETCDFPATH =
>
> bundled: io_only
> external: io_only $(WRF_SRC_ROOT_DIR)/external/RSL_LITE/librsl_lite.a gen_comms_rsllite module_dm_rsllite $(ESMF_TARGET)
> io_only: esmf_time wrfio_nf \
> wrf_ioapi_includes wrfio_grib_share wrfio_grib1 wrfio_int fftpack
>
>
> ######################
> ------------------------------------------------------------------------
> Settings listed above are written to configure.wrf.
> If you wish to change settings, please edit that file.
> If you wish to change the default options, edit the file:
> arch/configure_new.defaults
>
> Error : Not found /home/fahad/Documents/WRF/WRFV3/netcdf_links/include/netcdf.inc
> Please check this installation of NetCDF and re-run this configure script
>
> ./configure: 720: exit: Illegal number: -1
atyam
 
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Joined: Tue Aug 30, 2016 4:27 pm

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