Chemical species variable not found when convert_emiss

Any issues with running WRF Chemistry

Chemical species variable not found when convert_emiss

Postby quwj » Thu Apr 25, 2019 4:12 am

Dear WRF support team and users,

I am trying to convert_emiss with global emission, but when run convert_emiss.exe I got the errors showing that the variable of the chemical species can not be found.

I have tried to use the link of "GEOGRID.TBL -> GEOGRID.TBL.ARW_CHEM" under the /WPS/geogrid/ directory, but the error still appears.

I am also attaching the rsl.error.0000 file below.

Would any colleague please give me some clue on this?

Thanks a lot in advance.

Wenjun

rsl.error.0000
########################################################################################
taskid: 0 hostname: c456-073.stampede2.tacc.utexas.edu
module_io_quilt_old.F 2931 T
Ntasks in X 16 , ntasks in Y 16
WRF-CHEM V4.0.3 EMISSIONS PREPROCESSOR
*************************************
Parent domain
ids,ide,jds,jde 1 41 1 41
ims,ime,jms,jme -4 10 -4 10
ips,ipe,jps,jpe 1 3 1 3
*************************************
DYNAMICS OPTION: Eulerian Mass Coordinate
alloc_space_field: domain 1 , 31039908 bytes allocated
open file wrfinput_d01
wrf main: calling open_r_dataset for wrfinput
med_initialdata_input: calling input_input
Input data is acceptable to use: wrfinput_d01
mminlu = 'MODIFIED_IGBP_MODIS_NOAH'
NetCDF error: NetCDF: Variable not found
NetCDF error in wrf_io.F90, line 2883 Varname ebu_in_no
NetCDF error: NetCDF: Variable not found
NetCDF error in wrf_io.F90, line 2883 Varname ebu_in_no2
NetCDF error: NetCDF: Variable not found
NetCDF error in wrf_io.F90, line 2883 Varname ebu_in_co
NetCDF error: NetCDF: Variable not found
NetCDF error in wrf_io.F90, line 2883 Varname ebu_in_co2
NetCDF error: NetCDF: Variable not found
NetCDF error in wrf_io.F90, line 2883 Varname ebu_in_eth
NetCDF error: NetCDF: Variable not found
NetCDF error in wrf_io.F90, line 2883 Varname ebu_in_hc3
NetCDF error: NetCDF: Variable not found
NetCDF error in wrf_io.F90, line 2883 Varname ebu_in_hc5
NetCDF error: NetCDF: Variable not found
NetCDF error in wrf_io.F90, line 2883 Varname ebu_in_hc8
NetCDF error: NetCDF: Variable not found
NetCDF error in wrf_io.F90, line 2883 Varname ebu_in_ete
NetCDF error: NetCDF: Variable not found
NetCDF error in wrf_io.F90, line 2883 Varname ebu_in_olt
NetCDF error: NetCDF: Variable not found
NetCDF error in wrf_io.F90, line 2883 Varname ebu_in_oli
NetCDF error: NetCDF: Variable not found
NetCDF error in wrf_io.F90, line 2883 Varname ebu_in_pm25
NetCDF error: NetCDF: Variable not found
NetCDF error in wrf_io.F90, line 2883 Varname ebu_in_pm10
NetCDF error: NetCDF: Variable not found
NetCDF error in wrf_io.F90, line 2883 Varname ebu_in_dien
NetCDF error: NetCDF: Variable not found
NetCDF error in wrf_io.F90, line 2883 Varname ebu_in_iso
NetCDF error: NetCDF: Variable not found
NetCDF error in wrf_io.F90, line 2883 Varname ebu_in_api
NetCDF error: NetCDF: Variable not found
NetCDF error in wrf_io.F90, line 2883 Varname ebu_in_lim
NetCDF error: NetCDF: Variable not found
NetCDF error in wrf_io.F90, line 2883 Varname ebu_in_tol
NetCDF error: NetCDF: Variable not found
NetCDF error in wrf_io.F90, line 2883 Varname ebu_in_csl
NetCDF error: NetCDF: Variable not found
NetCDF error in wrf_io.F90, line 2883 Varname ebu_in_hcho
NetCDF error: NetCDF: Variable not found
NetCDF error in wrf_io.F90, line 2883 Varname ebu_in_ald
NetCDF error: NetCDF: Variable not found
NetCDF error in wrf_io.F90, line 2883 Varname ebu_in_xyl
NetCDF error: NetCDF: Variable not found
NetCDF error in wrf_io.F90, line 2883 Varname ebu_in_ket
NetCDF error: NetCDF: Variable not found
NetCDF error in wrf_io.F90, line 2883 Varname ebu_in_macr
NetCDF error: NetCDF: Variable not found
NetCDF error in wrf_io.F90, line 2883 Varname ebu_in_ora1
NetCDF error: NetCDF: Variable not found
NetCDF error in wrf_io.F90, line 2883 Varname ebu_in_ora2
NetCDF error: NetCDF: Variable not found
NetCDF error in wrf_io.F90, line 2883 Varname ebu_in_so2
NetCDF error: NetCDF: Variable not found
NetCDF error in wrf_io.F90, line 2883 Varname ebu_in_nh3
NetCDF error: NetCDF: Variable not found
NetCDF error in wrf_io.F90, line 2883 Varname ebu_in_oc
NetCDF error: NetCDF: Variable not found
NetCDF error in wrf_io.F90, line 2883 Varname ebu_in_bc
NetCDF error: NetCDF: Variable not found
NetCDF error in wrf_io.F90, line 2883 Varname ebu_in_sulf
NetCDF error: NetCDF: Variable not found
NetCDF error in wrf_io.F90, line 2883 Varname ebu_in_dms
NetCDF error: NetCDF: Variable not found
NetCDF error in wrf_io.F90, line 2883 Varname ebu_in_ash
NetCDF error: NetCDF: Variable not found
NetCDF error in wrf_io.F90, line 2883 Varname MEAN_FCT_AGTF
NetCDF error: NetCDF: Variable not found
NetCDF error in wrf_io.F90, line 2883 Varname MEAN_FCT_AGEF
NetCDF error: NetCDF: Variable not found
NetCDF error in wrf_io.F90, line 2883 Varname MEAN_FCT_AGSV
NetCDF error: NetCDF: Variable not found
NetCDF error in wrf_io.F90, line 2883 Varname MEAN_FCT_AGGR
NetCDF error: NetCDF: Variable not found
NetCDF error in wrf_io.F90, line 2883 Varname FIRESIZE_AGTF
NetCDF error: NetCDF: Variable not found
NetCDF error in wrf_io.F90, line 2883 Varname FIRESIZE_AGEF
NetCDF error: NetCDF: Variable not found
NetCDF error in wrf_io.F90, line 2883 Varname FIRESIZE_AGSV
NetCDF error: NetCDF: Variable not found
NetCDF error in wrf_io.F90, line 2883 Varname FIRESIZE_AGGR
NetCDF error: NetCDF: Variable not found
NetCDF error in wrf_io.F90, line 2883 Varname so2
NetCDF error: NetCDF: Variable not found
NetCDF error in wrf_io.F90, line 2883 Varname sulf
NetCDF error: NetCDF: Variable not found
NetCDF error in wrf_io.F90, line 2883 Varname no2
NetCDF error: NetCDF: Variable not found
NetCDF error in wrf_io.F90, line 2883 Varname no
NetCDF error: NetCDF: Variable not found
NetCDF error in wrf_io.F90, line 2883 Varname o3
NetCDF error: NetCDF: Variable not found
NetCDF error in wrf_io.F90, line 2883 Varname hno3
NetCDF error: NetCDF: Variable not found
NetCDF error in wrf_io.F90, line 2883 Varname h2o2
NetCDF error: NetCDF: Variable not found
NetCDF error in wrf_io.F90, line 2883 Varname ald
NetCDF error: NetCDF: Variable not found
NetCDF error in wrf_io.F90, line 2883 Varname hcho
NetCDF error: NetCDF: Variable not found
NetCDF error in wrf_io.F90, line 2883 Varname op1
NetCDF error: NetCDF: Variable not found
NetCDF error in wrf_io.F90, line 2883 Varname op2
NetCDF error: NetCDF: Variable not found
NetCDF error in wrf_io.F90, line 2883 Varname paa
NetCDF error: NetCDF: Variable not found
NetCDF error in wrf_io.F90, line 2883 Varname ora1
NetCDF error: NetCDF: Variable not found
NetCDF error in wrf_io.F90, line 2883 Varname ora2
NetCDF error: NetCDF: Variable not found
NetCDF error in wrf_io.F90, line 2883 Varname nh3
NetCDF error: NetCDF: Variable not found
NetCDF error in wrf_io.F90, line 2883 Varname n2o5
NetCDF error: NetCDF: Variable not found
NetCDF error in wrf_io.F90, line 2883 Varname no3
NetCDF error: NetCDF: Variable not found
NetCDF error in wrf_io.F90, line 2883 Varname pan
NetCDF error: NetCDF: Variable not found
NetCDF error in wrf_io.F90, line 2883 Varname hc3
NetCDF error: NetCDF: Variable not found
NetCDF error in wrf_io.F90, line 2883 Varname hc5
NetCDF error: NetCDF: Variable not found
NetCDF error in wrf_io.F90, line 2883 Varname hc8
NetCDF error: NetCDF: Variable not found
NetCDF error in wrf_io.F90, line 2883 Varname eth
NetCDF error: NetCDF: Variable not found
NetCDF error in wrf_io.F90, line 2883 Varname co
NetCDF error: NetCDF: Variable not found
NetCDF error in wrf_io.F90, line 2883 Varname ete
NetCDF error: NetCDF: Variable not found
NetCDF error in wrf_io.F90, line 2883 Varname olt
NetCDF error: NetCDF: Variable not found
NetCDF error in wrf_io.F90, line 2883 Varname oli
NetCDF error: NetCDF: Variable not found
NetCDF error in wrf_io.F90, line 2883 Varname tol
NetCDF error: NetCDF: Variable not found
NetCDF error in wrf_io.F90, line 2883 Varname xyl
NetCDF error: NetCDF: Variable not found
NetCDF error in wrf_io.F90, line 2883 Varname aco3
NetCDF error: NetCDF: Variable not found
NetCDF error in wrf_io.F90, line 2883 Varname tpan
NetCDF error: NetCDF: Variable not found
NetCDF error in wrf_io.F90, line 2883 Varname hono
NetCDF error: NetCDF: Variable not found
NetCDF error in wrf_io.F90, line 2883 Varname hno4
NetCDF error: NetCDF: Variable not found
NetCDF error in wrf_io.F90, line 2883 Varname ket
NetCDF error: NetCDF: Variable not found
NetCDF error in wrf_io.F90, line 2883 Varname gly
NetCDF error: NetCDF: Variable not found
NetCDF error in wrf_io.F90, line 2883 Varname mgly
NetCDF error: NetCDF: Variable not found
NetCDF error in wrf_io.F90, line 2883 Varname dcb
NetCDF error: NetCDF: Variable not found
NetCDF error in wrf_io.F90, line 2883 Varname onit
NetCDF error: NetCDF: Variable not found
NetCDF error in wrf_io.F90, line 2883 Varname csl
NetCDF error: NetCDF: Variable not found
NetCDF error in wrf_io.F90, line 2883 Varname iso
NetCDF error: NetCDF: Variable not found
NetCDF error in wrf_io.F90, line 2883 Varname co2
NetCDF error: NetCDF: Variable not found
NetCDF error in wrf_io.F90, line 2883 Varname ch4
NetCDF error: NetCDF: Variable not found
NetCDF error in wrf_io.F90, line 2883 Varname udd
NetCDF error: NetCDF: Variable not found
NetCDF error in wrf_io.F90, line 2883 Varname hket
NetCDF error: NetCDF: Variable not found
NetCDF error in wrf_io.F90, line 2883 Varname api
NetCDF error: NetCDF: Variable not found
NetCDF error in wrf_io.F90, line 2883 Varname lim
NetCDF error: NetCDF: Variable not found
NetCDF error in wrf_io.F90, line 2883 Varname dien
NetCDF error: NetCDF: Variable not found
NetCDF error in wrf_io.F90, line 2883 Varname macr
NetCDF error: NetCDF: Variable not found
NetCDF error in wrf_io.F90, line 2883 Varname ho
NetCDF error: NetCDF: Variable not found
NetCDF error in wrf_io.F90, line 2883 Varname ho2
NetCDF error: NetCDF: Variable not found
NetCDF error in wrf_io.F90, line 2883 Varname dms
NetCDF error: NetCDF: Variable not found
NetCDF error in wrf_io.F90, line 2883 Varname msa
NetCDF error: NetCDF: Variable not found
NetCDF error in wrf_io.F90, line 2883 Varname P25
NetCDF error: NetCDF: Variable not found
NetCDF error in wrf_io.F90, line 2883 Varname BC1
NetCDF error: NetCDF: Variable not found
NetCDF error in wrf_io.F90, line 2883 Varname BC2
NetCDF error: NetCDF: Variable not found
NetCDF error in wrf_io.F90, line 2883 Varname OC1
NetCDF error: NetCDF: Variable not found
NetCDF error in wrf_io.F90, line 2883 Varname OC2
NetCDF error: NetCDF: Variable not found
NetCDF error in wrf_io.F90, line 2883 Varname DUST_1
NetCDF error: NetCDF: Variable not found
NetCDF error in wrf_io.F90, line 2883 Varname DUST_2
NetCDF error: NetCDF: Variable not found
NetCDF error in wrf_io.F90, line 2883 Varname DUST_3
NetCDF error: NetCDF: Variable not found
NetCDF error in wrf_io.F90, line 2883 Varname DUST_4
NetCDF error: NetCDF: Variable not found
NetCDF error in wrf_io.F90, line 2883 Varname DUST_5
NetCDF error: NetCDF: Variable not found
NetCDF error in wrf_io.F90, line 2883 Varname SEAS_1
NetCDF error: NetCDF: Variable not found
NetCDF error in wrf_io.F90, line 2883 Varname SEAS_2
NetCDF error: NetCDF: Variable not found
NetCDF error in wrf_io.F90, line 2883 Varname SEAS_3
NetCDF error: NetCDF: Variable not found
NetCDF error in wrf_io.F90, line 2883 Varname SEAS_4
NetCDF error: NetCDF: Variable not found
NetCDF error: NetCDF: Variable not found
NetCDF error in wrf_io.F90, line 2883 Varname P10
Timing for processing wrfinput file (stream 0) for domain 1: 2.23828 elapsed seconds
Max map factor in domain 1 = 1.08. Scale the dt in the model accordingly.
WRF TILE 1 IS 1 IE 3 JS 1 JE 3
set_tiles3: NUMBER OF TILES = 1
INPUT LandUse = "MODIFIED_IGBP_MODIS_NOAH"
LANDUSE TYPE = "MODIFIED_IGBP_MODIS_NOAH" FOUND 33 CATEGORIES 2 SEASONS WATER CATEGORY = 17 SNOW CATEGORY = 15
Do not have ozone. Must read it in.
Master rank reads ozone.
num_months = 1
Broadcast ozone to other ranks.
INITIALIZE THREE Noah LSM RELATED TABLES
Skipping over LUTYPE = USGS
LANDUSE TYPE = MODIFIED_IGBP_MODIS_NOAH FOUND 20 CATEGORIES
INPUT SOIL TEXTURE CLASSIFICATION = STAS
SOIL TEXTURE CLASSIFICATION = STAS FOUND 19 CATEGORIES
calling inc/HALO_EM_INIT_1_inline.inc
calling inc/HALO_EM_INIT_2_inline.inc
calling inc/HALO_EM_INIT_3_inline.inc
calling inc/HALO_EM_INIT_4_inline.inc
calling inc/HALO_EM_INIT_5_inline.inc
calling inc/PERIOD_BDY_EM_INIT_inline.inc
calling inc/PERIOD_BDY_EM_MOIST_inline.inc
calling inc/PERIOD_BDY_EM_TKE_inline.inc
calling inc/PERIOD_BDY_EM_SCALAR_inline.inc
calling inc/PERIOD_BDY_EM_CHEM_inline.inc
*********************************************************************
* PROGRAM:WRF-Chem V4.0.3 MODEL
* *
* PLEASE REPORT ANY BUGS TO WRF-Chem HELP at *
* *
* wrfchemhelp.gsd@noaa.gov *
* *
*********************************************************************
calling gocart and racmkpp driver from chem_driver
WARNING: dust option 1 currently works only with the GOCART aerosol option.
WARNING: sea salt option 1 currently works only with the GOCART aerosol option.
calling biomass burning
in chem_init
call madronich phot initialization
call GOCARTRACM_KPP chem/aerosols initialization
initializing dry dep (wesely)
Setting last_chem_time to model start time-dt
calling inc/HALO_EM_INIT_1_inline.inc
calling inc/HALO_EM_INIT_2_inline.inc
calling inc/HALO_EM_INIT_3_inline.inc
calling inc/HALO_EM_INIT_4_inline.inc
calling inc/HALO_EM_INIT_5_inline.inc
calling inc/PERIOD_BDY_EM_INIT_inline.inc
calling inc/PERIOD_BDY_EM_MOIST_inline.inc
calling inc/PERIOD_BDY_EM_TKE_inline.inc
calling inc/PERIOD_BDY_EM_SCALAR_inline.inc
calling inc/PERIOD_BDY_EM_CHEM_inline.inc
past opening wrfinput_d01
READ GOCART BACKGROUND DATA
forrtl: severe (24): end-of-file during read, unit 19, file /work/06098/quwj/stampede2/WRF-Chem/WRF/test/em_real/wrf_gocart_backg
Image PC Routine Line Source
convert_emiss.exe 0000000003993C03 for__io_return Unknown Unknown
convert_emiss.exe 00000000039C178C for_read_seq Unknown Unknown
convert_emiss.exe 000000000049FE17 Unknown Unknown Unknown
convert_emiss.exe 000000000040C65E Unknown Unknown Unknown
libc-2.17.so 00002B4F4F6853D5 __libc_start_main Unknown Unknown
convert_emiss.exe 000000000040C569 Unknown Unknown Unknown
########################################################################################
quwj
 
Posts: 9
Joined: Wed Mar 27, 2019 10:41 am

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