I am using WRFV3.8.1 with 3.8.1 chemistry. I can compile successfully without KPP, but with KPP it seems to fall almost at the first step.
running chem/KPP/configure_kpp gives:
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~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
WKC - WRF-Chem/KPP coupler
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
KPP - symbolic chemistry Kinetics PreProcessor, Version 2.1
(http://www.cs.vt.edu/~asandu/Software/KPP)
KPP is distributed under GPL, the general public licence
(http://www.gnu.org/copyleft/gpl.html)
(C) 1995-1997, V. Damian & A. Sandu, CGRER, Univ. Iowa
(C) 1997-2003, A. Sandu, Michigan Tech
(C) 2003-2005, A. Sandu, Virginia Polytechnic Institute and State University
with contributions from:
R. Sander, Max-Planck Institute for Chemistry, Mainz, Germany
The current version of KPP was modified for WRF-Chem.
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
------------------------------------------
configure_kpp, settings:
location of flex library: /home/helen.macintyre/LIBRARIES/flex/lib/libfl.a
OMPCC = # -fopenmp CCOMP = gcc CC = $(DM_CC) -DFSEEKO64_OK
DESCRIPTION = GNU ($SFC/$SCC) SCC = gcc DM_CC = mpicc -cc=$(SCC) -DMPI2_SUPPORT CC_TOOLS = $(SCC) CC="$(SCC)" CFLAGS="$(CFLAGS)" \
writing chem//configure.kpp
/home/helen.macintyre/WRFv3.8.1/Build_WRF/WRFV3
-----------------------------------------
then chem/KPP/compile_wkc:
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====================================================
starting compile_wkc
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
WKC - WRF-Chem/KPP coupler
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
KPP - symbolic chemistry Kinetics PreProcessor, Version 2.1
(http://www.cs.vt.edu/~asandu/Software/KPP)
KPP is distributed under GPL, the general public licence
(http://www.gnu.org/copyleft/gpl.html)
(C) 1995-1997, V. Damian & A. Sandu, CGRER, Univ. Iowa
(C) 1997-2003, A. Sandu, Michigan Tech
(C) 2003-2005, A. Sandu, Virginia Polytechnic Institute and State University
with contributions from:
R. Sander, Max-Planck Institute for Chemistry, Mainz, Germany
The current version of KPP was modified for WRF-Chem.
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
------------------------------------------
configure_kpp, settings:
location of flex library: /home/helen.macintyre/LIBRARIES/flex/lib/libfl.a
OMPCC = # -fopenmp CCOMP = gcc CC = $(DM_CC) -DFSEEKO64_OK
DESCRIPTION = GNU ($SFC/$SCC) SCC = gcc DM_CC = mpicc -cc=$(SCC) -DMPI2_SUPPORT CC_TOOLS = $(SCC) CC="$(SCC)" CFLAGS="$(CFLAGS)" \
writing chem/KPP/configure.kpp
/home/helen.macintyre/WRFv3.8.1/Build_WRF/WRFV3
-----------------------------------------
compile kpp
make[1]: Entering directory `/home/helen.macintyre/WRFv3.8.1/Build_WRF/WRFV3/chem/KPP/kpp/kpp-2.1/src'
gcc -O -lm y.tab.o lex.yy.o scanner.o scanutil.o kpp.o gen.o code.o code_c.o code_f77.o code_f90.o code_matlab.o debug.o -L/home/helen.macintyre/LIBRARIES/flex/lib -lfl -o kpp
make[1]: Leaving directory `/home/helen.macintyre/WRFv3.8.1/Build_WRF/WRFV3/chem/KPP/kpp/kpp-2.1/src'
-----------------------------------------
compile the coupler
gcc -I../../../../inc -c -g gen_kpp.c
gcc -o registry_kpp -g registry_kpp.o my_strtok.o data.o type.o misc.o reg_parse.o gen_kpp.o get_wrf_chem_specs.o gen_kpp_mech_dr.o gen_kpp_interface.o get_kpp_chem_specs.o compare_kpp_to_species.o get_wrf_radicals.o get_wrf_jvals.o gen_kpp_utils.o change_chem_Makefile.o gen_kpp_interf_utils.o gen_kpp_args_to_Update_Rconst.o kpp_data.o sym.o symtab_gen.o
-----------------------------------------
check if Registry was touched
make: `mod_registry.temp' is up to date.
-----------------------------------------
Run kpp for mechanisms in chem/KPP/mechanisms
=========================================================
mechanisms/cb05_sorg_aq
model cb05_sorg_aq
/home/helen.macintyre/WRFv3.8.1/Build_WRF/WRFV3/chem/KPP/kpp/kpp-2.1/bin/kpp cb05_sorg_aq.kpp
/home/helen.macintyre/WRFv3.8.1/Build_WRF/WRFV3/chem/KPP/kpp/kpp-2.1/bin/kpp: error while loading shared libraries: libfl.so.2: cannot open shared object file: No such file or directory
make: *** [cb05_sorg_aq_Integrator.f90] Error 127
WARNING: If kpp fails here the path to WRF-Chem might be too long for yacc ...
grep: ../../../module_kpp_cb05_sorg_aq_Integr.F: No such file or directory
Makefile:50: warning: overriding recipe for target `.F.o'
../../../../configure.wrf:334: warning: ignoring old recipe for target `.F.o'
Makefile:58: warning: overriding recipe for target `.c.o'
../../../../configure.wrf:361: warning: ignoring old recipe for target `.c.o'
rm -f decomp_uses.inc
... and so on with errors.
I have gone through the solutions here (http://forum.wrfforum.com/viewtopic.php?f=39&t=3302) but none have solved the issue.
I have a feeling that the kpp binary is not pointing to the correct flex libraries, but the code tells me that it is. I have explicitly set FLEX and FLEX_LIB_DIR to my locally installed version. I have also edited my files according to the solution here http://ruc.noaa.gov/wrf/wrf-chem/KPP_yacc_flex_problems.pdf
I've gone through executing the make scripts line by line and the first instance that kpp is run, I get the error about not locating shared libraries :
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/home/helen.macintyre/WRFv3.8.1/Build_WRF/WRFV3/chem/KPP/kpp/kpp-2.1/bin/kpp cb05_sorg_aq.kpp
/home/helen.macintyre/WRFv3.8.1/Build_WRF/WRFV3/chem/KPP/kpp/kpp-2.1/bin/kpp: error while loading shared libraries: libfl.so.2: cannot open shared object file: No such file or directory
make: *** [cb05_sorg_aq_Integrator.f90] Error 127
Feeling very confused, any help appreciated.
