WRFDA compile: not create da_wrfvar.exe

Setting up the 3DVAR package within WRF.

WRFDA compile: not create da_wrfvar.exe

Postby pacomet-wrf » Fri Sep 23, 2016 4:50 am

Hi everyone

I'm trying to install WRFDA 3.8.1 following install instructions at http://www2.mmm.ucar.edu/wrf/users/wrfd ... _chap6.htm. Everything seems to run fine except that da_wrfvar.exe is not created.

Enviroment variables are set as
Code: Select all
NETCDF=/usr/local/WRFV3/LIBRARIES/netcdf
HDF5=/usr/local/hdf5
LD_LIBRARY_PATH=/usr/local/hdf5/lib
CPPFLAGS=-I/usr/local/hdf5/include:/usr/local/hdf5/include:-I/usr/local/WRFV3/LIBRARIES/grib2/include
LDFLAGS=-L/usr/local/hdf5/lib:/usr/local/hdf5/lib:-L/usr/local/WRFV3/LIBRARIES/grib2/lib


Following is the compile error log

Code: Select all
1.16user 0.01system 0:01.17elapsed 99%CPU (0avgtext+0avgdata 58284maxresident)k
0inputs+560outputs (0major+12702minor)pagefaults 0swaps
da_radiance.f:5629:61:

          H5T_NATIVE_DOUBLE,r8d1,sz1,iret,H5S_ALL_F,H5S_ALL_F)
                                                             1
Error: There is no specific subroutine for the generic ‘h5dread_f’ at (1)
da_radiance.f:5664:62:

          H5T_NATIVE_REAL,lat89ar,sz1,iret,H5S_ALL_F,H5S_ALL_F)
                                                              1
Error: There is no specific subroutine for the generic ‘h5dread_f’ at (1)
da_radiance.f:5677:62:

          H5T_NATIVE_REAL,lon89ar,sz1,iret,H5S_ALL_F,H5S_ALL_F)
                                                              1
Error: There is no specific subroutine for the generic ‘h5dread_f’ at (1)
da_radiance.f:5717:71:

             H5T_NATIVE_REAL,tb_low(:,:,k),sz1,iret,H5S_ALL_F,H5S_ALL_F)
                                                                       1
Error: There is no specific subroutine for the generic ‘h5dread_f’ at (1)
da_radiance.f:5751:61:

          H5T_NATIVE_REAL,tb89ah,sz1,iret,H5S_ALL_F,H5S_ALL_F)
                                                             1
Error: There is no specific subroutine for the generic ‘h5dread_f’ at (1)
da_radiance.f:5784:61:

          H5T_NATIVE_REAL,tb89av,sz1,iret,H5S_ALL_F,H5S_ALL_F)
                                                             1
Error: There is no specific subroutine for the generic ‘h5dread_f’ at (1)
da_radiance.f:5814:63:

          H5T_NATIVE_INTEGER,loflo,sz1,iret,H5S_ALL_F,H5S_ALL_F)
                                                               1
Error: There is no specific subroutine for the generic ‘h5dread_f’ at (1)
da_radiance.f:5857:63:

          H5T_NATIVE_INTEGER,lofhi,sz1,iret,H5S_ALL_F,H5S_ALL_F)
                                                               1
Error: There is no specific subroutine for the generic ‘h5dread_f’ at (1)
da_radiance.f:5894:61:

          H5T_NATIVE_REAL,ear_in,sz1,iret,H5S_ALL_F,H5S_ALL_F)
                                                             1
Error: There is no specific subroutine for the generic ‘h5dread_f’ at (1)
da_radiance.f:5923:61:

          H5T_NATIVE_REAL,ear_az,sz1,iret,H5S_ALL_F,H5S_ALL_F)
                                                             1
Error: There is no specific subroutine for the generic ‘h5dread_f’ at (1)
da_radiance.f:5952:61:

          H5T_NATIVE_REAL,sun_az,sz1,iret,H5S_ALL_F,H5S_ALL_F)
                                                             1
Error: There is no specific subroutine for the generic ‘h5dread_f’ at (1)
da_radiance.f:5981:61:

          H5T_NATIVE_REAL,sun_el,sz1,iret,H5S_ALL_F,H5S_ALL_F)
                                                             1
Error: There is no specific subroutine for the generic ‘h5dread_f’ at (1)
da_radiance.f:6015:61:

             H5T_NATIVE_REAL,clw,sz1,iret,H5S_ALL_F,H5S_ALL_F)
                                                             1
Error: There is no specific subroutine for the generic ‘h5dread_f’ at (1)
Command exited with non-zero status 1
0.53user 0.00system 0:00.54elapsed 99%CPU (0avgtext+0avgdata 43444maxresident)k
0inputs+8outputs (0major+9393minor)pagefaults 0swaps
make[1]: [da_radiance.o] Error 1 (no tiene efecto)
4.76user 0.04system 0:04.82elapsed 99%CPU (0avgtext+0avgdata 148284maxresident)k
0inputs+2064outputs (0major+40232minor)pagefaults 0swaps
20.12user 0.12system 0:20.26elapsed 99%CPU (0avgtext+0avgdata 374928maxresident)k
0inputs+8888outputs (0major+99169minor)pagefaults 0swaps
da_setup_structures.f:89:7:

    use da_radiance, only : da_setup_radiance_structures
       1
Fatal Error: Can't open module file ‘da_radiance.mod’ for reading at (1): No existe el archivo o el directorio
compilation terminated.
Command exited with non-zero status 1
0.06user 0.00system 0:00.07elapsed 95%CPU (0avgtext+0avgdata 19016maxresident)k
0inputs+8outputs (0major+3081minor)pagefaults 0swaps
make[1]: [da_setup_structures.o] Error 1 (no tiene efecto)
da_transfer_model.f:56:7:

    use da_setup_structures, only : da_setup_runconstants,da_write_increments, &
       1
Fatal Error: Can't open module file ‘da_setup_structures.mod’ for reading at (1): No existe el archivo o el directorio
compilation terminated.
Command exited with non-zero status 1
0.08user 0.00system 0:00.09elapsed 95%CPU (0avgtext+0avgdata 21684maxresident)k
0inputs+8outputs (0major+4030minor)pagefaults 0swaps
make[1]: [da_transfer_model.o] Error 1 (no tiene efecto)
da_minimisation.f:116:7:

    use da_radiance, only : da_calculate_grady_rad, da_write_filtered_rad, &
       1
Fatal Error: Can't open module file ‘da_radiance.mod’ for reading at (1): No existe el archivo o el directorio
compilation terminated.
Command exited with non-zero status 1
0.16user 0.00system 0:00.16elapsed 97%CPU (0avgtext+0avgdata 18840maxresident)k
0inputs+8outputs (0major+2847minor)pagefaults 0swaps
make[1]: [da_minimisation.o] Error 1 (no tiene efecto)
da_test.f:58:7:

    use da_minimisation, only : da_transform_vtoy_adj,da_transform_vtoy, da_swap_xtraj, &
       1
Fatal Error: Can't open module file ‘da_minimisation.mod’ for reading at (1): No existe el archivo o el directorio
compilation terminated.
Command exited with non-zero status 1
0.06user 0.00system 0:00.06elapsed 96%CPU (0avgtext+0avgdata 18224maxresident)k
0inputs+8outputs (0major+2858minor)pagefaults 0swaps
make[1]: [da_test.o] Error 1 (no tiene efecto)
da_wrfvar_top.f:46:7:

    use da_minimisation, only : da_get_innov_vector,da_minimise_cg, &
       1
Fatal Error: Can't open module file ‘da_minimisation.mod’ for reading at (1): No existe el archivo o el directorio
compilation terminated.
Command exited with non-zero status 1
0.14user 0.00system 0:00.15elapsed 97%CPU (0avgtext+0avgdata 24324maxresident)k
0inputs+8outputs (0major+4554minor)pagefaults 0swaps
make[1]: [da_wrfvar_top.o] Error 1 (no tiene efecto)
ar: `u' modifier ignored since `D' is the default (see `U')
ar: creando libwrfvar.a
ar: da_setup_structures.o: No existe el archivo o el directorio
make[1]: [libwrfvar.a] Error 1 (no tiene efecto)
ranlib: 'libwrfvar.a': No hay tal fichero
make[1]: [libwrfvar.a] Error 1 (no tiene efecto)
da_wrfvar_main.f:31:7:

    use da_wrfvar_top, only : da_wrfvar_init1,da_wrfvar_init2,da_wrfvar_run, &
       1
Fatal Error: Can't open module file ‘da_wrfvar_top.mod’ for reading at (1): No existe el archivo o el directorio
compilation terminated.
Command exited with non-zero status 1
0.01user 0.00system 0:00.01elapsed 84%CPU (0avgtext+0avgdata 15896maxresident)k
0inputs+8outputs (0major+1886minor)pagefaults 0swaps
make[1]: [da_wrfvar_main.o] Error 1 (no tiene efecto)
gfortran: error: da_wrfvar_main.o: No existe el archivo o el directorio
Command exited with non-zero status 1
0.00user 0.00system 0:00.00elapsed ?%CPU (0avgtext+0avgdata 2812maxresident)k
0inputs+0outputs (0major+122minor)pagefaults 0swaps
make[1]: [da_wrfvar.exe] Error 1 (no tiene efecto)
make[2]: atención: se fuerza a -jN en el submake: se deshabilita el modo de servidor de tareas.


Any idea about the problem? Could it be related to hdf5 install? Apparently hdf5 was properly installed.

Thanks in advance
pacomet-wrf
 
Posts: 1
Joined: Wed Sep 21, 2016 3:07 am

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