I have compiled WRFDA on a cloud computer with gfortran. When I initially compiled I thought everything was fine and I was able to complete the tutorial case, but when I went back to run a real data test case for myself I found that da_update_bc.exe did not compile. There is no mention of da_update_bc.F90 or .exe in the compile log. I tried to compile da_update_bc.F90 in the build directory using gfortran -l da_update_bc.F90 /usr/local/include but I get an error that it cannot open netcdf.inc. I am using netcdf-4.1.1 compiled with gfortran as well and the only thing I can think of is that maybe there is incompatibility here.
Does anyone have any suggestions?